![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj5g3v1854500.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37934.4 Da PI: 6.8671 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.5 | 3.2e-54 | 7 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eelv +yLk+k+++ k++l +vi evd+yk+ePwd++ +++++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ Lj5g3v1854500.3 7 VPPGFRFHPTEEELVGYYLKRKINSLKIDL-DVIVEVDLYKIEPWDIQDrckLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 99 69****************************.99**************952432234677*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s k++ +g++ktLvfykgrap+g+ktdW+mheyr Lj5g3v1854500.3 100 VMS-KNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRH 135 ***.8999***************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-60 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.766 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-28 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0045491 | Biological Process | xylan metabolic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0090059 | Biological Process | protoxylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MDMESCVPPG FRFHPTEEEL VGYYLKRKIN SLKIDLDVIV EVDLYKIEPW DIQDRCKLGY 60 EQQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAV MSKNRIIGMR KTLVFYKGRA 120 PNGRKTDWIM HEYRHQTSEH GPPQEEGWVV CRAFRKPSPS HRQGFESWCT NQPQFFRDHH 180 HQSYTRPLSI TDILNETNNV LHPAEGTSYS SHPFSSEQPF LPNQTVMDKQ QLIELPQLDS 240 PTASLALNEQ RLNGLTTNED HCSDERSNNS GQVGIDWKSL DSLFTSQFTD TTNYFSHPHN 300 LPMMVPHGHE LQPQNQPNHV LGCFPDL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-49 | 7 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-49 | 7 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-49 | 7 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-49 | 7 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-49 | 7 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-49 | 7 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-49 | 7 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-49 | 7 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-49 | 7 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-49 | 7 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-49 | 7 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-49 | 7 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3ulx_A | 7e-49 | 2 | 156 | 10 | 168 | Stress-induced transcription factor NAC1 |
4dul_A | 7e-49 | 7 | 162 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-49 | 7 | 162 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00017 | PBM | Transfer from AT1G71930 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-94 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006606215.1 | 0.0 | PREDICTED: NAC domain-containing protein 30-like | ||||
Swissprot | Q9C8W9 | 1e-116 | NAC30_ARATH; NAC domain-containing protein 30 | ||||
TrEMBL | A0A0R0ECI9 | 0.0 | A0A0R0ECI9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G31551.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71930.1 | 1e-106 | vascular related NAC-domain protein 7 |